The GitHub Personal Access Token (PAT) used by EasyBuild for the GitHub integration features (like --new-pr, --from-pr, etc.) is shown in plain text in EasyBuild debug log files.
as a consequence, tokens are not included in the partial log files that are uploaded into a gist when using --upload-test-report in combination with --from-pr, nor in the installation logs that are copied to the software installation directories;
the message is only logged when using --debug, so it will not appear when using the default EasyBuild configuration (only info messages are logged by default);
the log message is triggered via --from-pr, but also via various other GitHub integration options like --new-pr, --merge-pr, --close-pr, etc., but usually only appears in the temporary log file that is cleaned up automatically as soon as eb completes successfully;
you may have several debug log files that include your GitHub token in /tmp (or a different location if you've set the --tmpdir EasyBuild configuration option) on the systems where you use EasyBuild, but they are located in a subdirectory that is only accessible to your account (permissions set to 700);
the only way that a log file that may include your token could have been made public is if you shared it yourself, for example by copying the contents of the log file into a gist manually, or by sending a log file to someone;
for log files uploaded to GitHub, your token would be revoked automatically when GitHub notices it;